Lead developer
scTEQuant
Bayesian viral & transposable-element quantification
A next-generation Bayesian pipeline for locus-specific viral and transposable-element quantification from single-cell and bulk RNA-seq. Developed with AI-assisted tooling and benchmarked head-to-head against established methods, it works at transcriptional-unit resolution across bulk, single-cell, and spatial RNA-seq.
Co-developer
Stellarscope
Locus-specific transposable element quantification
A bioinformatic tool to quantify locus-specific expression of transposable element sequences, used to publish the first single-cell atlas of TE and HERV expression across the human immune system.